Protein Info for EX31_RS13530 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 109 to 136 (28 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 217 to 242 (26 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 327 (24 residues), see Phobius details amino acids 339 to 362 (24 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 249 (230 residues), 59 bits, see alignment E=2e-20 amino acids 223 to 393 (171 residues), 64.8 bits, see alignment E=3.5e-22

Best Hits

Swiss-Prot: 58% identical to YHHS_ECOL6: Uncharacterized MFS-type transporter YhhS (yhhS) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0769)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>EX31_RS13530 MFS transporter (Rahnella sp. WP5)
MSLSTLRSNALLNKRILSFMLFTFVVYLTIGLPLAVLPGFVHNTLGYNSVLAGLVISVQY
FSTLISRPHAGRYADLLGPKRVVIFGLICCGISGIFYAMAFWFSAFPLASLLMLCVGRIF
LGIGESFGSTGTTLWGIGAVGAKHTARVISWNGVATYGAMAVGAPLGVLLNHAYGLMGVA
VLIIVAAAFAAILASMKAAISVTAGKRIAFKAVVGRIWLYGLGLGFGTIGFGVIATFITL
YYADKGWSGAAFTLTLFSLGFVGARLVFGNMINRFGGLRVSLVSFVFEVAGLLMIWLGHD
PLSVQLGAFLTGSGFSLIFPALGVEAVKQVPPQNQGTALGLYSAFLDLGLGITGPVAGLI
ISHFGTPSIYLAAAFMVVIAWLLTLRLWVNTSRQSPAE