Protein Info for EX31_RS13285 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 41 to 62 (22 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 96 to 120 (25 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 158 to 175 (18 residues), see Phobius details amino acids 196 to 223 (28 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 263 to 283 (21 residues), see Phobius details amino acids 295 to 315 (21 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 354 to 375 (22 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 315 (308 residues), 152.7 bits, see alignment E=1.9e-48 PF06779: MFS_4" amino acids 12 to 369 (358 residues), 28.7 bits, see alignment E=1.3e-10 PF00083: Sugar_tr" amino acids 39 to 174 (136 residues), 36.7 bits, see alignment E=3.7e-13

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 100% identity to rah:Rahaq_0816)

Predicted SEED Role

"Putative sugar transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>EX31_RS13285 MFS transporter (Rahnella sp. WP5)
MPVALLALALSAFAIGTTEFVIMGLLPNVAGDLNVSIPSAGWLISGYALGVAIGAPIMAV
LTAKLPRKNTLLLLMSIFIIGNVMCALSYSYDFLMLARIITALCHGAFFGIGAVVAASLV
APNRRASAVALMFTGLTLANVLGVPLGTALGQAFGWRSTFWVVAVIGVASLFALYKKLPD
KKEEEPTDLRKEIRALGSLGLWLSLSITIFFAAAMFALFTYIAPILTQITGVSEHGVSWT
LLLIGLGLTIGNVLGGRLADWRLGISLTLTFLMIAIFSVLFSYTSVHLVAAEITLFIWAM
VNFAAVPALQVNVVTYGKNAPNLVSTLNIAAFNVGNALGAWVGGAVIERGMGLSTVPLAA
GALGAIGFVLCVITFRRAAKKAEKAAA