Protein Info for EX31_RS12045 in Rahnella sp. WP5

Annotation: tautomerase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF01361: Tautomerase" amino acids 2 to 58 (57 residues), 33.7 bits, see alignment E=2.7e-12 amino acids 68 to 119 (52 residues), 23.3 bits, see alignment E=4.9e-09 PF14552: Tautomerase_2" amino acids 38 to 119 (82 residues), 105.1 bits, see alignment E=1.7e-34

Best Hits

Swiss-Prot: 40% identical to YUSQ_BACSU: Probable tautomerase YusQ (yusQ) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4052)

Predicted SEED Role

"4-oxalocrotonate tautomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>EX31_RS12045 tautomerase family protein (Rahnella sp. WP5)
MPFVRIDMVEGKPETYRKTVGDVIYDALRSALNAPENDKFIVISEHSPAEMMISPDYLNI
QRSPNCIVIQVTLNTGRTLEMKKAFYHAVAYGLHEKVGLRLEDVFISLVEVPKENWSFGN
GEAQYA