Protein Info for EX31_RS11595 in Rahnella sp. WP5

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 PF00005: ABC_tran" amino acids 22 to 181 (160 residues), 90.1 bits, see alignment E=8.2e-29 amino acids 290 to 442 (153 residues), 114.5 bits, see alignment E=2.5e-36 PF13401: AAA_22" amino acids 302 to 470 (169 residues), 32.2 bits, see alignment E=4.8e-11 PF08352: oligo_HPY" amino acids 496 to 533 (38 residues), 22.6 bits, see alignment 4.6e-08

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to rah:Rahaq_1734)

Predicted SEED Role

"Alpha-glucoside transport ATP-binding protein AglK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (547 amino acids)

>EX31_RS11595 ABC transporter ATP-binding protein (Rahnella sp. WP5)
MTRTILEMRGLRIETLDGSPLVQDISLKLAAGEVLGLIGESGAGKSTIGLAALGYARQGC
RIAGGEVFLDGTDIVSQPSSVKREWRGRRVAYVAQSAAASFNPALTIEKQVCEGPIRHGL
MNKEESRQWAISLFRSLDLPDPENIGKRYPHQLSGGQLQRAMAAMAMSCKPDLLIMDEPT
TALDVTTQIEVLVMLRKLVREFNTAALYITHDLAVVAQLADRIMVLRHGKEVETGSTQTI
LENPQQEYTRRLVAEREHALTPLADGHESAGQPLLTLQKLSTGYNGKRVVHDVSLQLPRG
KTLAIIGESGSGKSTLARALVGLLPDTEGTVDFDGIALSHNFHQRNKETLRRMQMIYQLP
DVALNPRQTLLDIIGRPLTFYFGMNKKQVRERVEELLRLTELPLKLIDRRPGELSGGQKQ
RVCIARALAAQPELIICDEATSALDPLVAEEVLNLLRRLQQQLGLSYLFITHDLGTVKRI
AHQVAVMYQGQVVASGDTDVVFSAPMHSYTEKLLTSVPEMRTSWLDEVLALRGTALPAAA
ISSTGVL