Protein Info for EX31_RS11390 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 44 to 64 (21 residues), see Phobius details amino acids 72 to 95 (24 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 218 to 241 (24 residues), see Phobius details amino acids 260 to 283 (24 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details amino acids 390 to 413 (24 residues), see Phobius details amino acids 456 to 477 (22 residues), see Phobius details PF07690: MFS_1" amino acids 10 to 388 (379 residues), 167 bits, see alignment E=5.9e-53 PF12832: MFS_1_like" amino acids 49 to 164 (116 residues), 30.9 bits, see alignment E=1.6e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to rah:Rahaq_1827)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (491 amino acids)

>EX31_RS11390 MFS transporter (Rahnella sp. WP5)
MKNTLALMAVCLAALMSGLEISSVPVLSPVLEQELHASFRELQWIMNAYTLACTTVLMAT
GTLADRYGRKRVFIISITAFGLTSLMCGLAGSAQWLIAGRFLQGLSGGAMLTCLIAILSS
QFPQGKARSQAFAAWGITFGFGLGFGPIIGGTLVAWLSWRWVFLIHVVIAVLTLILALKN
VVESRDGQAKKLDLGGLITLSVTVLGATFLITQGSSLGWNSVTAGAVLLATAVSAVMFIG
IEKRHPHPMFDFSVFRVRAFSGALMGSVGMNFSFWPLMIYLPVYYQGGLGYGSVATGMAL
LAYTLPTLLMPPLGEKLTTRFGASRLIPLGLFTIGAGFMLMQIAVVHHLSLLPGALLAGI
ALGLTNTPVTNTTTGSVAANRAGMASGIDISARLITLAINIALMGNLLMAGIARSLKKVM
PAAGDLSLLAERIAGGSAIETLQSGQIAQALTDGFAGILLYGAAGVWVLALLSYLLFNGR
GRRKTMSCEPS