Protein Info for EX31_RS11345 in Rahnella sp. WP5

Annotation: flagellar type III secretion system protein FlhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 32 to 50 (19 residues), see Phobius details amino acids 90 to 116 (27 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 186 to 214 (29 residues), see Phobius details PF01312: Bac_export_2" amino acids 8 to 347 (340 residues), 423.6 bits, see alignment E=3.1e-131 TIGR00328: flagellar biosynthetic protein FlhB" amino acids 8 to 353 (346 residues), 429.5 bits, see alignment E=5.1e-133

Best Hits

Swiss-Prot: 76% identical to FLHB_YEREN: Flagellar biosynthetic protein FlhB (flhB) from Yersinia enterocolitica

KEGG orthology group: K02401, flagellar biosynthetic protein FlhB (inferred from 100% identity to rah:Rahaq_1836)

Predicted SEED Role

"Flagellar biosynthesis protein FlhB" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>EX31_RS11345 flagellar type III secretion system protein FlhB (Rahnella sp. WP5)
MAEESDLEKSEAPTAHRLEKAREEGQIPRSRELTSILMLGGGLTLLWMSGESMARQLGVM
ISQGLKFDHGMVSDDRQVLQQMATLLGRAVWALLPVIGGLILIALAAPLLLGGLMFSGKS
FEFKFSRMDPIAGLKRLFSGQVLAELLKAVLKALLVGTVAGLYLWHKWPDMMRLMAQPTI
PALGEALNMVVFCGLMVVLGLTPMVGFDVFWQIWSNLKKLRMSKQDIRDEHKSQEGDPHV
KGRIRQQQRAMARRRMMADVPKADVIVTNPTHYAVALQYSENKMSAPKVLAKGAGDVALR
IRELGVEHKIPMLEAPPLARALYRHSDIGQQIPATLYAAVAEVLAWVYQLKRWKREGGLI
PKKPQHLPVPEGLDFAAGESDTHG