Protein Info for EX31_RS11330 in Rahnella sp. WP5

Annotation: flagellar synthesis chaperone protein FlgN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF05130: FlgN" amino acids 1 to 138 (138 residues), 87.6 bits, see alignment E=5.6e-29

Best Hits

Swiss-Prot: 42% identical to FLGN_YEREN: Flagella synthesis protein FlgN (flgN) from Yersinia enterocolitica

KEGG orthology group: K02399, flagella synthesis protein FlgN (inferred from 100% identity to rah:Rahaq_1840)

Predicted SEED Role

"Flagellar biosynthesis protein FlgN" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (150 amino acids)

>EX31_RS11330 flagellar synthesis chaperone protein FlgN (Rahnella sp. WP5)
MKNFIKTMTTLVETLQALDQVINHEQTILCSGRVNGAALQHITEQKSSLLATVDYLDKQR
RQHDERLRQTAPYSDPQGQSQPEIAAMWQDIVQMTARLSQINRHNGMLLGKQIAYNTEAL
AILNASQTQKFYGPNGQETVSGQTVRKISV