Protein Info for EX31_RS11320 in Rahnella sp. WP5

Annotation: flagellar basal body P-ring formation protein FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 46 (46 residues), see Phobius details PF17656: ChapFlgA_N" amino acids 65 to 134 (70 residues), 35.7 bits, see alignment E=1.3e-12 TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 125 to 258 (134 residues), 127.8 bits, see alignment E=1.4e-41 PF08666: SAF" amino acids 137 to 198 (62 residues), 35.5 bits, see alignment E=1.9e-12 PF13144: ChapFlgA" amino acids 138 to 258 (121 residues), 91.6 bits, see alignment E=6e-30

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 100% identity to rah:Rahaq_1842)

Predicted SEED Role

"Flagellar basal-body P-ring formation protein FlgA" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>EX31_RS11320 flagellar basal body P-ring formation protein FlgA (Rahnella sp. WP5)
MSVDLWPVVGWHKGKTRMNMLKICRTGITLGCIMTGATSGAVSYAQSLPVQVKSVPASSN
SDTLLSSQIQQFFRQQYAESGMQVTVVVNTPAARQPQCLSPQFMLSPNSRTWGNVSVAVN
CNGKKSYVQTKVQVSGTYWVAAKNVPAGAHLTQTDMQQKTGRLDLLPPKTILDSQQAVNG
ITLRNISIGQPLTLSMLRRPWMVHAGQEVQVQATGSGFNVSSAGKAMNNAAANESVRIRM
PSGAIVNGTVGSDGSVTVTI