Protein Info for EX31_RS11005 in Rahnella sp. WP5

Annotation: EAL domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 227 to 252 (26 residues), see Phobius details PF12792: CSS-motif" amino acids 40 to 226 (187 residues), 98.9 bits, see alignment E=2.9e-32 PF00563: EAL" amino acids 262 to 496 (235 residues), 223.7 bits, see alignment E=2.4e-70

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1913)

Predicted SEED Role

"Rtn protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (507 amino acids)

>EX31_RS11005 EAL domain-containing protein (Rahnella sp. WP5)
MALNWLTRRSVRICLSLLAFLVVAALGILAISWQTSQGLRRDTSANLQQSVRLVDMTLDN
AAIATSAVENLIGVPCDANTVQALRWQVAKVPNVRTVNLYRQNTIYCASLFGPRADNIST
DKYIDGRLMLMRGNSITPDHPLIAYRHDVNGSGVLVGVDGYFLHNILSLLSTHAYLVLQV
GDQWMDSNGSIHTGEGWPDGERMELASQNYPYAIRLVIRPSDHWGYVFDYATVSLVLFPL
LSLFIAFMTYSLLGRVGSPTAALREALEKKQFIPYLQPVVDGTTHEVTGAEVLMRWQHPQ
SGLIPPYQFIPLAEESGLIVPMTRLIMTQVREQFGPLAAQLPKNFHFGFNICASHFKDLS
LAEDCKAFIDAFRENPINLVLELTERELIEPGEITSSLFHTLRQMGVLIALDDFGTGHSS
LAYLQKFHIDILKIDQSFIGRIGTDALAGHIVDNVIDLAKRLQMIIVAEGIETQTQVNYL
APYRLEFLQGYFFGKPVPPADFIRKWL