Protein Info for EX31_RS10965 in Rahnella sp. WP5

Annotation: DUF969 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 20 to 35 (16 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details PF06149: DUF969" amino acids 1 to 216 (216 residues), 322.4 bits, see alignment E=6.7e-101

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1921)

Predicted SEED Role

"FIG015373: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>EX31_RS10965 DUF969 domain-containing protein (Rahnella sp. WP5)
MWVLIGIPIVVLGFALRFNPLLVVTVAGISTGLAGGMHTIDIISAFGKAFTDNRYMGLIW
LTLPVIAILERSGLKEQARHLISKVHAATTGRVLMLYFFLRQMTAALGLNSLGGHAQMVR
PLIAPMAEAAATTKYGDLPNDVRQKIRAHAAAADNVAVFFGEDIFIAVQSILLIKGFLEQ
YGINVEPLHLSVWAIPTAIAALIIHFIRLWLLDRSLAKRFDVHHGSAAK