Protein Info for EX31_RS10815 in Rahnella sp. WP5

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 106 to 124 (19 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details PF00106: adh_short" amino acids 6 to 188 (183 residues), 150.9 bits, see alignment E=3.2e-48 PF13561: adh_short_C2" amino acids 11 to 188 (178 residues), 113.2 bits, see alignment E=1.5e-36

Best Hits

Swiss-Prot: 36% identical to BOA17_BOTFB: Oxidoreductase BOA17 (BOA17) from Botryotinia fuckeliana (strain B05.10)

KEGG orthology group: None (inferred from 99% identity to rah:Rahaq_1953)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>EX31_RS10815 oxidoreductase (Rahnella sp. WP5)
MSQSKLLFITGVSSGFGRALAEEALKAGHRVVGTLRNAQACAEFDALAPGRSFGRMLDVT
DFEAIAPLAAAVEQEIGAVDVLVNNAGYGHEGIMEESPLSEALHQFDVNVFGAVAVIKAF
LPYFRQRRSGHILNITSMGGFITLPGISYYCGSKFALQGISETLTKELKPFNIAVTAIQP
GSFRTDWAGRSMVRSPRAISDYDASFDPVRETREKRSGHQPGDPLKAAQAMLQLLDAPEP
PASLLLGSDAVKFVREKMQQMREDIDIWETVSRSADG