Protein Info for EX31_RS10805 in Rahnella sp. WP5

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 transmembrane" amino acids 43 to 60 (18 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 49 to 527 (479 residues), 414.8 bits, see alignment E=2.4e-128 PF02321: OEP" amino acids 106 to 315 (210 residues), 88.8 bits, see alignment E=2e-29 amino acids 342 to 525 (184 residues), 117.5 bits, see alignment E=3.1e-38

Best Hits

KEGG orthology group: None (inferred from 99% identity to rah:Rahaq_1955)

Predicted SEED Role

"Outer membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>EX31_RS10805 efflux transporter outer membrane subunit (Rahnella sp. WP5)
MPEHIKLNKKSSTLRNQPSVMPSCSPLCEGRGRKGVLHTGPRFLTLSTLTLVLAACSVGP
DYQKPNPVTPSAYNDMTQPKDKDGASIALPSEPNPLWWKAFNDPRLDSLITRAIAGNISL
QQAVLRIAGAREQVKQAEGAWLPSVQGSAKMTRQQLGLKGILDSSGASQQLDDLGPEASG
AISTATRPVNLYQGNFDASWELDLFGGTRRQVEAANAQTQSSIEQRNDALVSLEAEVARA
YLQLRGAQSVTEAIQTQIDVAQQTLDLTQNRQQNGLSPQLDVENARAQLGSLRAQLPQYQ
AQERQAMNGLAVLLGQTPGSLDAELSAPKPMPALPAAVPVDVPSQLARRRPDVRKAEADL
HAATANIGVSVAQMFPSISLTGQFGMRNTDVSYLDNWSSHFYSFGPQISLPIFQGGRLVS
SVHLSRAQQANAALNYRQTVLTALQDVDNALVNYRTDQDQVSGLDQTTEALQTAFDLASD
SYRQGLSTFINVLDAQRQLAQAHQQSAEAKVKTSTDLVSLYKALGGGWEPYQNVDLPTYT
VFGPAATPDVKVQTTPGVTR