Protein Info for EX31_RS10545 in Rahnella sp. WP5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 76 to 105 (30 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 270 to 288 (19 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 333 to 350 (18 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 60% identity to pao:Pat9b_2560)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>EX31_RS10545 hypothetical protein (Rahnella sp. WP5)
MNGFSRLEKYIAVAGLFIFVFSVIVSRRPDIIFNAQPWAEDGKIWMENIYNNGFWNSLIY
PQNGYYQTISRITYGIAILTGISNAALVANIIAISIRCFFVLFVLSGRMSFIRMPYRIAA
VIYFLLMPNLTEGYVNITNVHWYLSLYLMAVVLADDGKEVVWKIHDFTLLIISSLSGPFV
VFIAPCLLIKRVSQRGGIVKAIKGINAFDITMAVCCIIQVAAILNSSDTGRSSAPLGASF
SLLADVISYRVIGGSLFMNDRISDMGSMHVLNILLFIALIFLVVIFFFRCGWRFKSAVLF
PVLMIGFALAKPMMSLDQPQWPTLLIPGGGERYFFITNFAFFSLLLYVVSRISPKSLAPL
MIISIMALTVLLRGFSIPPMAEVGYREDIKSFNALPTGESMQIRINPPGWSMHLHKK