Protein Info for EX31_RS10415 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 48 to 70 (23 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 205 to 222 (18 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 320 to 337 (18 residues), see Phobius details amino acids 343 to 363 (21 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details amino acids 406 to 429 (24 residues), see Phobius details PF07690: MFS_1" amino acids 59 to 361 (303 residues), 107.3 bits, see alignment E=4.1e-35

Best Hits

Swiss-Prot: 36% identical to YDER_BACSU: Uncharacterized MFS-type transporter YdeR (ydeR) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 42% identity to bte:BTH_I1197)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>EX31_RS10415 MFS transporter (Rahnella sp. WP5)
MCSPVMNGLLKSNTPLPEAVPASWPRHQGPVPPTSSRGVRMNTTSPVYLTARQTVLFAAA
AAFMVANIYYSQPLLAVIGRQFGTPPSDTALLVTLTQLGYGLGVLFLVPLGDFTDRRRLA
SVMISLCIIALLLTAASQSFWFFASVQLLLGLASSATMVLIPYVASHTVTEERGQRVGQM
ITGILLGILLARTVSGLVADALSWRAMYLLAGVAATMVLLTVRKLMVPATLSVEKISYPI
LIRSMLTLLKEHQPLRVRAFYCMMGMGSFSILWTGLTLFLSGEPYHFKPSAIGLFGLIGA
AGAMSAGIAGRISDRGHSRILTIVLAVLLLISWMMMAEARTSLLFLIGGILLLDVAAMGL
QVVHQSIIYKLEVDAQSRITSIFVTSGFIGMALGSALSSVGFRHWQWTGICVLGAVLPAL
MLIHLLIASLMRPAAR