Protein Info for EX31_RS09700 in Rahnella sp. WP5

Annotation: GlpM family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 transmembrane" amino acids 5 to 22 (18 residues), see Phobius details amino acids 27 to 47 (21 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details PF06942: GlpM" amino acids 6 to 112 (107 residues), 171.9 bits, see alignment E=2.3e-55

Best Hits

Swiss-Prot: 67% identical to YDGC_ECOLI: Inner membrane protein YdgC (ydgC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_2566)

Predicted SEED Role

"FIG01221263: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (113 amino acids)

>EX31_RS09700 GlpM family protein (Rahnella sp. WP5)
MTGLVVKALIGALVVILIGVLSKTRNYYIAGLVPLFPTFALIAHYIVGTERSIEALRTTI
IFGLWAVIPYMVYLISLYFFIGSMKLPYALFGAVVCWSLAAWLLISLWTRFHA