Protein Info for EX31_RS09545 in Rahnella sp. WP5

Annotation: flagellar motor switch protein FliG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 PF14842: FliG_N" amino acids 3 to 102 (100 residues), 110.1 bits, see alignment E=1.6e-35 TIGR00207: flagellar motor switch protein FliG" amino acids 3 to 328 (326 residues), 453.7 bits, see alignment E=2.2e-140 PF14841: FliG_M" amino acids 118 to 186 (69 residues), 86.3 bits, see alignment E=2.6e-28 PF01706: FliG_C" amino acids 217 to 321 (105 residues), 125.3 bits, see alignment E=2.6e-40

Best Hits

Swiss-Prot: 84% identical to FLIG_SALTY: Flagellar motor switch protein FliG (fliG) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02410, flagellar motor switch protein FliG (inferred from 100% identity to rah:Rahaq_2490)

Predicted SEED Role

"Flagellar motor switch protein FliG" in subsystem Bacterial Chemotaxis or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>EX31_RS09545 flagellar motor switch protein FliG (Rahnella sp. WP5)
MTMTGTEKSAILMITLGEDRAVEVFKHLSPREVQQISGAMANIHQISNKQLAEVLNEFED
ESEQYAALSVNTSEYLRAVLTKALGEERASSLLEDILESRETTSGMETLNFMEPLMAADL
IRDEHPQIIATILVHLKRGQAADILALFDERLRNDVMLRIATFGGVQPAALAELTEVLNN
LLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVIEAVRGYDGELAQKIIDEMFLFENLVD
VDDRSIQRLLQEVEGESLLVALKGAEQPLRDKFLRNMSQRAADILRDDLANRGPMRMSLV
ENEQKAILQTVRRLAESGEMMVGGGEDSYV