Protein Info for EX31_RS09215 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 255 to 273 (19 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 340 to 365 (26 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 23 to 237 (215 residues), 113.8 bits, see alignment E=9.7e-37 amino acids 248 to 426 (179 residues), 35.9 bits, see alignment E=4.2e-13 PF07690: MFS_1" amino acids 49 to 232 (184 residues), 64.6 bits, see alignment E=7.9e-22 amino acids 260 to 430 (171 residues), 54.8 bits, see alignment E=7.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_2412)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>EX31_RS09215 MFS transporter (Rahnella sp. WP5)
MTRTGQISPATASQSRRALVAGSVGNFIEWYEFGVYGYLATLIAGNFFTLEGQTGLTGLL
LTYASFALAFFCRPIGAIIFGRIGDRIGRKPTLIAVVLLMTLATAIIGLLPTYAQIGVAA
PLLLTLMRMFQGLFAGGEFGGAVSLMTEFAPKGKRGIYGAWQSFTVSLGLLTGVALVALL
VQTLPEAQMKDWGWRIPFLLALPMGLVALYLRLKLDETPNFVASKKAEPKAQKTAAEKAS
AVATAKAIALGIGRMMGWSAGGYTFLVVMPSYLQTSLHATFLQALVATVLANVGFALAIL
PSGWLSDKIGRKKVMMIAVFAVIVLSFPLLHLLQNPESSLLVKGIAVLIAGATIGMIAGP
GPAMLAEMFPTRVRYTGLGLSYSLSNAVFSGCAGLIITGLIKETGNLDIPAYYVVATCVV
SLFALMTLRKDDHLRELEE