Protein Info for EX31_RS08490 in Rahnella sp. WP5

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details transmembrane" amino acids 181 to 203 (23 residues), see Phobius details amino acids 223 to 249 (27 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 350 to 370 (21 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 27 to 365 (339 residues), 101.5 bits, see alignment E=5.4e-33 PF01061: ABC2_membrane" amino acids 170 to 334 (165 residues), 43.7 bits, see alignment E=2.5e-15

Best Hits

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 100% identity to rah:Rahaq_0496)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>EX31_RS08490 ABC transporter permease (Rahnella sp. WP5)
MTGREWVKTWWKTFGKVLTGLLDKPMWMMLLLSLCVMSLVYANRTVWDLPVAVIDQDHST
ASRMLARQLDAGSKIATVAYDNLAEAEHDLALRKLFAVIIMPVDLEKKILAGQNIVIPVY
GDATNRLANGQIQQDVLAAYQSILTQYNTDLLLSNGFSERQASVVLSPILGQSLDVFNPG
ISFAAIIFPGLLVMLLQHSLLIASVRVSIVLNSGPAGKPSIPAFLGGISALIPVWLFLSI
VLFVLWPWVLGYRQTATIPEILLLTFPFLLAVLGLGKLVTECLRSVELIYLTLAFLTTPV
FYISGTIWPLQAMPAWVRAISSMLPSTWATKAIAGVNQMGLPFKDVGGDIMMLLILCVFY
TFIGIAVGMLRDGVRLRAMFRPKHPRA