Protein Info for EX31_RS08360 in Rahnella sp. WP5

Annotation: Gfo/Idh/MocA family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF01408: GFO_IDH_MocA" amino acids 2 to 119 (118 residues), 101.3 bits, see alignment E=3.1e-33

Best Hits

Swiss-Prot: 72% identical to YGJR_ECOLI: Uncharacterized oxidoreductase YgjR (ygjR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0525)

Predicted SEED Role

"Possible oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>EX31_RS08360 Gfo/Idh/MocA family oxidoreductase (Rahnella sp. WP5)
MIRIGVVGTNWITQRFIDAAHESGKMKLTAIYSRTLEGAKKLGEDYPVEHYFDSLEAMAA
SDLIDAVYIASPNSLHYPQSLLFLSNKKHVICEKPLASNLREAESLIACAKENNLVLFEA
FKTAYLPNFLHMKGALNRIGKLRKAILNYCQYSSRYPRYLAGENPNTFNPAFSNGSIMDI
GYYCLASAISLFGEPESVKATATLLESGVDGQGTVILSYADDFEVVINHSKISDSLLPSE
IQGEDGTLQMEKLSECQTLSLTPRGSQKLDLTQPQHINTMLYEAETFAILVDSQFVAHPG
LEVSRITAKVLTEIRRQTGVVFPADNQP