Protein Info for EX31_RS08140 in Rahnella sp. WP5

Annotation: bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 TIGR02198: bifunctional protein RfaE, domain I" amino acids 6 to 312 (307 residues), 430 bits, see alignment E=7.6e-133 PF00294: PfkB" amino acids 13 to 305 (293 residues), 179.2 bits, see alignment E=1.9e-56 PF08543: Phos_pyr_kin" amino acids 188 to 287 (100 residues), 27.5 bits, see alignment E=3.1e-10 TIGR02199: bifunctional protein RfaE, domain II" amino acids 332 to 472 (141 residues), 206.9 bits, see alignment E=1.8e-65 TIGR00125: cytidyltransferase-like domain" amino acids 342 to 408 (67 residues), 58.7 bits, see alignment E=7.5e-20 PF01467: CTP_transf_like" amino acids 344 to 469 (126 residues), 60.2 bits, see alignment E=3.8e-20

Best Hits

Swiss-Prot: 86% identical to HLDE_SERP5: Bifunctional protein HldE (hldE) from Serratia proteamaculans (strain 568)

KEGG orthology group: K03272, D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC: 2.7.1.- 2.7.7.-] (inferred from 100% identity to rah:Rahaq_0623)

MetaCyc: 84% identical to fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (Escherichia coli K-12 substr. MG1655)
RXN0-4342 [EC: 2.7.7.70]; RXN0-4341 [EC: 2.7.7.70, 2.7.1.167]

Predicted SEED Role

"ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase" in subsystem LOS core oligosaccharide biosynthesis (EC 2.7.-.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.-, 2.7.7.-

Use Curated BLAST to search for 2.7.-.- or 2.7.1.- or 2.7.1.167 or 2.7.7.- or 2.7.7.70

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>EX31_RS08140 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE (Rahnella sp. WP5)
MKVTLPDFHRAGVLVVGDVMLDRYWYGPTNRISPEAPVPVVKVNTIEERPGGAANVAMNI
SSLGASSRLIGLTGVDDAARALSERLAEVKVNCDFVALSTHPTITKLRILSRNQQLIRLD
FEEGFEGVDLQPMLTKIEQALPQSGALVLSDYAKGALTEVQKMIQLARKAGVPVLVDPKG
SDFERYRGATLLTPNLSEFEAVVGRCKNEDEIVARGMQLIADFELSALLVTRSEHGMTLL
QPGKAPFHMPTQAQEVYDVTGAGDTVIGTLAAALAAGNTLEESCFLANAAAGVVVGKLGT
STVSPVELENAIGGRSDVGFGVMNEEQLKAAVAMARQRGEKVVMTNGIFDILHAGHVSYL
ANARKLGDRLIVAVNSDASTKRLKGETRPVNALQNRMIVLGALGAVDWVVSFDEDTPQRL
IAGILPDLLVKGGDYKPEQIAGCQEVWANGGEVRVLNFEDGLSTTKIINQIKAQD