Protein Info for EX31_RS07405 in Rahnella sp. WP5

Annotation: beta-(1,2)-glucan biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2849 transmembrane" amino acids 416 to 439 (24 residues), see Phobius details amino acids 445 to 466 (22 residues), see Phobius details amino acids 824 to 841 (18 residues), see Phobius details amino acids 847 to 868 (22 residues), see Phobius details amino acids 946 to 965 (20 residues), see Phobius details amino acids 971 to 992 (22 residues), see Phobius details amino acids 1497 to 1517 (21 residues), see Phobius details PF10091: Glycoamylase" amino acids 1330 to 1506 (177 residues), 58.6 bits, see alignment 9.7e-20 PF06165: Glyco_transf_36" amino acids 1568 to 1817 (250 residues), 250.5 bits, see alignment E=2.9e-78 amino acids 2074 to 2315 (242 residues), 257.7 bits, see alignment E=1.8e-80 PF17167: Glyco_hydro_36" amino acids 2346 to 2770 (425 residues), 394.5 bits, see alignment E=8e-122

Best Hits

Predicted SEED Role

"Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)" (EC 2.4.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-

Use Curated BLAST to search for 2.4.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2849 amino acids)

>EX31_RS07405 beta-(1,2)-glucan biosynthesis protein (Rahnella sp. WP5)
MKNAVINWFKIKRAPPVISHTRRHRASALAHPVPISAELFSADQMERFGGKLALSHKLSG
KKLPYYLLKRLDDNEKVLTRSCLILSSGEKAGITPAGEWLLDNFYLIEEQIRLVRQLLPK
NFGKGLPSLGLPHSCPRIYDIATEVVSHSDGLWDIKTLTRFLSTYQSVRPLTLGELWAFP
GMLRLALIENLRRVSIEVANAQQERNLADFWVNKLQDSAENDPASQIIVIADMARTNPPR
SSAFVAELVRRLQGHGSMLALPLTWVEQRLSEVGLTQREVIDKFNQQLAASQLSVSNSIM
GLRQLTEMDWAEFAENLSVVEKVLREDPAGIYASMHFDTRDNYRHQIEQLSRHSLHDEAF
VASRAVALAQQATDSFQQQHVGYYLIDAGRKTLEKDLQVRFSLQTRIRSRLSQTPLLSWL
GSLLLLTTAITAEVLYHTVHPGMHWAWWLLLGPVVLVASQFALNLLSEITTRSRTPQPLP
RLEFVGGIPEHASTLVVIPCLLGSRKNIDALISSLEVCYLGNVLSHLNFALLTDFHDNPE
QHNEDNDALLSYATQQIQTLNRRYTDAQGPLFTLLHRDSEMNAAQSVWMGYERKRGKLNA
LNRWLRGEGEPFSRVEGRTQAQLRQVKYVITLDSDTVLPRATAHQLVAAMAHPLNHPVYD
TERQRVISGYAILQPRLAEEIPENGQGRYAALCSSVPGNDPYSSMSSDIYQDLFGEGSFV
GKGIYDVDMFIRATENTCPENLVLSHDLLEGCYARSGMLSDVVLYEQYPDHYLADVARKT
RWIRGDWQLLNWLGFRVTQEDGTRTRNPLTTLSRWKLFDNLRRSLIAPALLTLIFCTLLL
VPNKLYWLGFIASMLLFPVVVALVLDLFNKGSRRKVIAHLKSVASATLSRCSRILLQLMT
LPHEAVYSIHAILLTLWRLNVSHRMLHEWASVNIGEKSRAHSQVYFYRRMWANLLAGVAV
IMLAAGAHPPLLWFALPLGLLWLVAPLVMCWMSRPAVRQKPGIDAQQQRFLRQTARETWY
FFETFVNAEENWLPPDNFQEIPQPVIAHRTSPTNIGLSLLANITAWDFGYITQGEVLERT
SQTLDTLDKLEHFRGHLYNWYDTRTLAPLNPRYISSVDSGNLAGHLLTLSSGLRLWRTQP
ALNMTAWLAGLADTLNMAESQTDEPLMTKLRESLKQATAAKAAESITYLQDMHGLIAASA
QGWQQRLATQLATGIKEWSDFYGALPAEAQNQPLPTLHWLAQQDARTSPLLSRSIGLARQ
RLDIIGELEQRLNEHAHMDFRFLYDKNTHLLTVGYNCDAHKMDSGKYDLLPSEIRLTNYV
TIATNQLPQKSWFALGRLFTVIDKQPSLMSWSGSMFEYLMPQLVMPAYPDTLLVQMCQTA
VDRQIAWGKENNVPWGISESAYAAFDLNQNYQYHAFGVPGLGLKRGLGEDMVVAPYATMM
ALMIRPQEACVNLLELENCGARGEYGFYDALDYSPSRLVRGQIYIVVRSYMAHHQGMGFL
ALANVLLGAPMTARFAANAAFQSARLLLQERVPDAVELYSPRRHFESHDNMLQKVNVELR
EFTDVDSPSPEIQLLSNTHYHLMVTQAGGSVSRWKDLTLTRWREDATRDNRGIFCYVSDP
ESGAVTSNTWQPLGKQKGTYHAVLTDFGAEFTRTRGLLTLQTHIVVSPEDDVEIRRMTVT
HNGRHSRTLDITTYAEVVLAPAANDAAHPAFSNLFVQTELVPAQEGILCHRRPREPDEAC
PWMFHMMAIHGAVERETSFETDRAAFIGRGNTAASPQAMQKGGTLGNSAGAVLDPVMAIR
QRIRLRPGVPVIIDMVYGISDTRLQSLMLLEKYRDHHIADRVFEIAWSHSQVVLRQLNAS
EDDAGLFNRLAGALIFASQEMRGDAQSVAANRRGQSGLWGQSLSGDLPIVLLTMTSNENI
GLVTLLIRAHHYWRLKGLKVDLVLLCNDSGGYQQALQNQILSLVASGAGSSQTDIPGGIF
VRNGEQMTPDDRMLLMSVAHVVIDDRRGSLDDQLNQRTQTPLVSLPALVPVRTVNDSQPV
MSPPRELACFNGLGGFSPDGREYQIVLNEGQTTPAPWSNVLANASFGTVISESAQAYTWY
ENAHEYRLTPWENDPVSDSSGEAFYLRDEDSGSVWSPAPLPVRGIGGYVTRHGFGYSCFE
HTERGISSEMTVLVAEHAPVKLIIMTLTNLSGRPRRLSVTGYAEWVMADLRAKSAMHIVT
SAAHVVKGCGVLATNHYTSNGSERTAFFAVTGAHCSVSGDRREFFGRTGSAAMPAAMKNQ
RLSDKTGAALDPCGAVQSATTLIDGDQRTFIFALGLGQNAADAEALIHQYLEEGAAQAEL
DRIHHHWHQVLDKIQITTPDKSVDLLANGWLIYQTLASRILARSGYYQSGGAFGFRDQLQ
DTLALSHAAPERMREQILLCASRQFIEGDVQHWWHPPTGNGVRTRCSDDYLWLPLAISHY
ITVTGDHGIAEESVPYLEARLLEAGEESFYEQPQVSATQESLWQHGVRALKHGLKMGEHG
LPLMGAGDWNDGMNLVGLGGRGESVWLGFFLYDVLQRYGALAEERQDIAIATLCREQSAL
LKQNLNNHAWDGEWYLRGYFDSGETLGSHMNDECQIDAIAQSWSVLSGAGTPERTASAMR
SVDQRLVDNDAGLIRLLTPPFDGNGPNPGYIRGYLPGVRENGGQYTHGAIWAVMAFARQG
NTERAWELMSMINPINHSLTPEAVSRYKGEPYVISADIYSVDPHSGRAGWSWYTGSAGWT
YRLITESLLGITRHGDAIAIHSKLPALWPEITVTYQQGSSRYLITVRHNTGDYCVTLDGH
ALDGDLIPLTDDGNEHQVVVELGSRAENA