Protein Info for EX31_RS06985 in Rahnella sp. WP5

Annotation: iron export ABC transporter permease subunit FetB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 217 to 241 (25 residues), see Phobius details TIGR00245: TIGR00245 family protein" amino acids 6 to 251 (246 residues), 317.7 bits, see alignment E=2.6e-99 PF03649: UPF0014" amino acids 10 to 245 (236 residues), 272 bits, see alignment E=2.1e-85

Best Hits

Swiss-Prot: 76% identical to FETB_ECOLI: Probable iron export permease protein FetB (fetB) from Escherichia coli (strain K12)

KEGG orthology group: K02069, putative ABC transport system permease protein (inferred from 100% identity to rah:Rahaq_2209)

Predicted SEED Role

"YbbM seven transmembrane helix protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>EX31_RS06985 iron export ABC transporter permease subunit FetB (Rahnella sp. WP5)
MNQHNITNQSLALALILVVVALLVSKKEKLGLEKDIIWSVARAIVQLVIVGYVLKYIFDI
NNSLLTVLMVLFICVNAALNAKKRSRNIDNGFIISFIAITVGTSLTLMILILSGSIEFLP
MQVIPISGMIAGNAMVAVGLCYSNLNQRFLDNQQKILEMLSLGAPVKMASDRIIRDSIRA
AMIPTVDAAKTVGIVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLATASLSTIIAGYLA
YKRFYNDRAQLRDLKSS