Protein Info for EX31_RS06845 in Rahnella sp. WP5

Annotation: MmgE/PrpD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 PF03972: MmgE_PrpD_N" amino acids 10 to 244 (235 residues), 212.4 bits, see alignment E=6e-67 PF19305: MmgE_PrpD_C" amino acids 274 to 434 (161 residues), 107.3 bits, see alignment E=7.9e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_2181)

Predicted SEED Role

"Immune-responsive protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>EX31_RS06845 MmgE/PrpD family protein (Rahnella sp. WP5)
MSNVSQQQLLAGFVVNTRFEDLPPRLVERAKRHILDTLGAGLVGSASDVAKQVAAMILGE
GALPLSPVWGCRELTSPRNAALLNGVAAHALELDDTGGCDHSGAVVIPALLAVLPLCPQP
VSGKAFITAVVIGYDVARRVLEACGGYSPHNGAGWHSTSTCGVFGAAAAAGKLMGLNAAQ
ISSALGISGSFSGGLWAFIHDGSQSKKLHAGRAAEGGVLAALSARQGISGPSQLFGDKWG
GFLSTLAPASATPEALTAQLGEIWKLERCSIKPYASCRGTHSAIDATGILLERLNASAGD
IEKIVVRLCPFLNGMCGDNEIATLAAAQMSIRYAIAARVVFGHAGLAAYDADKRQDPALL
EMIRRIDLREDDTLSADGEPDVTLFTRSGQSQTLRVDVALGAPGNPVSDEQLKQKFISLA
TRVMSAEGAERIWEQGMRLELARDINAFIGR