Protein Info for EX31_RS06505 in Rahnella sp. WP5

Annotation: acid resistance repetitive basic protein Asr

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details

Best Hits

Swiss-Prot: 62% identical to ASR_YERPN: Acid shock protein (asr) from Yersinia pestis bv. Antiqua (strain Nepal516)

KEGG orthology group: None (inferred from 96% identity to rah:Rahaq_2095)

Predicted SEED Role

"Acid shock"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (122 amino acids)

>EX31_RS06505 acid resistance repetitive basic protein Asr (Rahnella sp. WP5)
MKKVLALVVAAAMGLSSVAFAAETTATPAPAAAATTAAPAPAAKHVTKHKTHKKVAQKAQ
AAKKHVKHAKKAAPVAQKAQAAKKHVKHAKKAAPVAQKAQAAKKHVKHAKKAAPAAKATP
AA