Protein Info for EX31_RS05475 in Rahnella sp. WP5

Annotation: cellulose biosynthesis protein BcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1320 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF13432: TPR_16" amino acids 278 to 334 (57 residues), 23.2 bits, see alignment (E = 1.6e-08) amino acids 352 to 409 (58 residues), 22 bits, see alignment (E = 3.8e-08) PF14559: TPR_19" amino acids 279 to 335 (57 residues), 33.1 bits, see alignment (E = 1.2e-11) amino acids 466 to 523 (58 residues), 37.3 bits, see alignment (E = 5.7e-13) PF05420: BCSC_C" amino acids 917 to 1317 (401 residues), 367.9 bits, see alignment E=1e-113

Best Hits

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1320 amino acids)

>EX31_RS05475 cellulose biosynthesis protein BcsC (Rahnella sp. WP5)
MKKHKLSLAVIRAIYLVGIAGVASFSAATFAADTTNPAMKALFDQAAYWHERAHDDLAKD
ALQKVLLVEPDNAQALYLMSLYSMQSGDKTAASQWREKLAAASPDDPRLTSLNSAKAMQS
IPPAQLASARQMAAQGNVSGALSAYRTIFNGNQPLDSLATEYYLTMAGDKSLQPQAIAGL
QQRVASRPDDTQARLGLGKVLTYQESTRRDGIKLLSTMAGSSTEADRSLRQALLWMTPQE
ADRDFYQGYQARHPNDTGVMTYFQKNIGGAAKGQGFTALNSGDVNSAKAKFESVLADNPN
DADALAGLGYIAQRSGNFEQASQYLSKAAAQGGPNSAQLSNQAQDSAFYAQLAKAKDAAG
SGSYDAALAAVTPLTQVGGEKGQSASLLRADILRRKGDLAGAEQQYSALGDNADARAGLY
YVLRQQNKTAEASQVLKTLPAGIQAKMNPPTVADVIEPMRRQAAQAVANNDPQRALNILQ
QARERQPSNVWVKLDMARILQSQGQTAQAQSIMAPSARPGASSADLYAAALFASETKNWS
TANALLSRIPRSSQNQGMRELAQRANFNAQMADAESYLQQGNAAAASNTLRALAQNPPAA
PADVGALAKNLAAAGQLPLAVQLVRQNMRQGVTGNAGDYADQVSVLNQAGLSNEAQAFLQ
NPQIQSGTSPTALASLRNGFVITQADQLREQGQYAAAYDKLVVALQADPQNRDLMLAMAR
LYQSGKLNKQAGQVYNYLMSNDTPTQDARVGAINVALGEGDNQRAKTLMEGLRGPRTPDR
LLLEARVAEAQGDHQQALALLRSAKGKMIGLEGTDSQAQVAGLQISDNPFINRSTRTSAS
RPATQSSYGAVLPWQVSDQVSTPGNIPAATTEPTAVTQRNATEKQIDDMLDELQGKTATW
AQGDMSIRGRDGESGLSQLTEAKAPMTFAFVPFDTSRLSIGVTPVSLSAGSPSGTGNSRF
GQGALAAAQSAQKDVAAAAAAAGLDIASYSTFAKLQAAAAANSSTNCTSANATSDQCVAY
NTITGTDPTTYAAPAAGNQSATGVEVNAALTGDSYKADIGSTPLGQDLNSLVGGVQWAPK
LTDFTTLRVTAERRAVTDSILSYVGTKDNYSGKEWGQVTKNGGSVNLSYDDGDAGFYAEA
GYYSYLGNNVKSNKSVNANAGLYVRPFRYDDRELKTGINVGYMDFDKNLSYYSFGQGGYF
SPQNYVSVSFPVEYTQKYDDWDLKLSGAVGYQSYSQDKSAYFPNNPDLQKQLEDLVAEGY
GTEAYYSGKTQNGIGWNAGVGGNYHLNKSMQIGGQVGYDTFGDYNESKAQVYFRYLMGQN