Protein Info for EX31_RS05465 in Rahnella sp. WP5

Annotation: UDP-forming cellulose synthase catalytic subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 699 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 378 to 430 (53 residues), see Phobius details amino acids 442 to 465 (24 residues), see Phobius details amino acids 493 to 513 (21 residues), see Phobius details amino acids 524 to 545 (22 residues), see Phobius details TIGR03030: cellulose synthase catalytic subunit (UDP-forming)" amino acids 4 to 677 (674 residues), 881.7 bits, see alignment E=1.6e-269 PF13641: Glyco_tranf_2_3" amino acids 129 to 354 (226 residues), 71.4 bits, see alignment E=3.3e-23 PF00535: Glycos_transf_2" amino acids 131 to 300 (170 residues), 87.8 bits, see alignment E=2.5e-28 PF13506: Glyco_transf_21" amino acids 193 to 353 (161 residues), 43.1 bits, see alignment E=1e-14 PF13632: Glyco_trans_2_3" amino acids 210 to 421 (212 residues), 79.8 bits, see alignment E=7.8e-26 PF03552: Cellulose_synt" amino acids 302 to 520 (219 residues), 32.6 bits, see alignment E=1.1e-11 PF07238: PilZ" amino acids 550 to 644 (95 residues), 33.7 bits, see alignment E=1.2e-11

Best Hits

KEGG orthology group: K00694, cellulose synthase (UDP-forming) [EC: 2.4.1.12] (inferred from 100% identity to rah:Rahaq_0106)

Predicted SEED Role

"Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12)" (EC 2.4.1.12)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.12

Use Curated BLAST to search for 2.4.1.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (699 amino acids)

>EX31_RS05465 UDP-forming cellulose synthase catalytic subunit (Rahnella sp. WP5)
MNKFLFSLLVLLLLPVAAVIIITPMDSQKQYIFGLISIGLLFLLGISKSRRISVVMVIMS
VMMSTRYIYWRATETLHFNSTIEAILGIGLFLAELYVWLILLLGYLQTTWPLKRTIEPLP
DDTTLWPTVDVYIPSYNESLDVVRDTVLAAQCIDYPKDKIKIYVLDDGKRDEFAVFSADA
GVGYITRNDNSHAKAGNLNHAMKLTKGELICVFDCDHVATRAFLQATVGSFLKDPRLALI
QTPHYFYSPDPFERNLSAGRTMPNEGALFYGPVQQGNDNWNATFFCGSCAVIRRVALEEV
GGFAVETVTEDAHSALKMQRRGWNTAFLDIPLAAGLATERLGLHVIQRTRWARGMTQIFR
VDNPLLGRGLKWQQRLCYLNAMLHFQFGLPRVVFLTAPLAFLLFNLNIISSSASLIFAYA
LPHLVMSLYINSRMNGRFRYTFWGEIYETVMAFHLILPTLVTMFAPKRGKFNVTDKGGLL
DVGFFDFNIVKPHLIVAILMIIGIGYGIVRAIFHNYFAIDPNVIALNIAWGSFSVLILLA
AIAVAKETRQVRKTIRIDVAIPAIIHYANGISLRTTTIDMSMGGVQLVTPDVRYLDEEIE
EVEIQLSSGAESFPVTQISGDKERLRLQFENLPLSKRRELVRVVLCRADAWIGEEYPPDN
PFRSLVSIIRCVFELFYNTWKERRAKNKPADATSKSEAA