Protein Info for EX31_RS05350 in Rahnella sp. WP5

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 36 to 62 (27 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 196 to 219 (24 residues), see Phobius details amino acids 230 to 255 (26 residues), see Phobius details amino acids 287 to 311 (25 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 365 to 385 (21 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details amino acids 432 to 452 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 10 to 433 (424 residues), 113.9 bits, see alignment E=9.1e-37 PF00324: AA_permease" amino acids 33 to 453 (421 residues), 61 bits, see alignment E=9.3e-21

Best Hits

Swiss-Prot: 76% identical to YGJI_ECOLI: Inner membrane transporter YgjI (ygjI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0134)

Predicted SEED Role

"FIG00553873: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>EX31_RS05350 amino acid permease (Rahnella sp. WP5)
MAGSSRNTIGKFGLLSMTFAAVFSFNNVINNNIQLGIASAPVFLVATIIYFIPFCLIIAE
FVSLNKSSEAGVYAWVKSALGGRWAFMTAYTYWFVNLFFFTALLPRVIAYASYAFLGHDY
IFTPFTTAIISICLFAFSTMISNSGAKLLGPMTSVTSTLMLLLTFSYIVLAGAALMGGAE
PADPINVQAMTPHFNWAFLGIIAWIFQAAGGAESVAVYVNDVKGGSRAFVKVIIISGLVI
GVLYSIASLLINVFVAKSALHFTGGTVQVFEGLSAYFGLPAVLMNRFVGVVSFTAMFGSL
LMWTAAPVKIFFTEIPKGIFGEKTIRLNKHGVPTRAAWIQFLIVIPLMLIPTLGSDSVQD
LMNTLINMTAAASMLPPLFIMLAYLNLRLKYDSVERDFKMGSRMQGITIVGTLIVIFTVG
FIASTFPTGASIITIVFYNVGGLVLFLGYAWWKYNKYSKGLDDKTRYHEDTPLARIVLES
QNETARVKKENMAKSLSGA