Protein Info for EX31_RS05320 in Rahnella sp. WP5

Annotation: putative hydroxymethylpyrimidine transporter CytX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 52 to 75 (24 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details amino acids 311 to 334 (24 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 371 to 390 (20 residues), see Phobius details amino acids 396 to 414 (19 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 13 to 374 (362 residues), 85.3 bits, see alignment E=2.1e-28 TIGR02358: putative hydroxymethylpyrimidine transporter CytX" amino acids 24 to 409 (386 residues), 390.9 bits, see alignment E=3.7e-121

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0140)

Predicted SEED Role

"Predicted hydroxymethylpyrimidine transporter CytX" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>EX31_RS05320 putative hydroxymethylpyrimidine transporter CytX (Rahnella sp. WP5)
MKDNSIYSPQASVPEKSRVLGWSDLFSLWFSLGMGLMVLQAGAILAPGLGLAGSLAAIVL
GSAVGVALLALVGVTGGQTGMSSMASLRLSLGKRGVALPVLFNLIQLIGWGAFEIVVMRD
AASLLAKRAWGDDSFWANPTLWTFIFGVVATLLAASGPLAFIRLVLRRWGIWLLLASCAW
LTGYLFLHADLSTLWHKAGDGSMPFALACDIVVSMAFSWLPLVSDYTRFGKSARQNFWGT
ACGYFLGSVWMMALGVAYTLAFVSTSTDANALLLALSGIALGIPLLLILVDEHENAFADI
HSAAVSAGTSLPVSVGKLTLGIGLLCTLIAWAVPLTQYENFLLLIGSVFAPLFGVVLTHH
FVLRRQTQKDLNIRSLAAWITGIVVYHLMANLLPDIGATIPSLLVAGLVCWGLGRKA