Protein Info for EX31_RS05285 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 135 (25 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details amino acids 236 to 254 (19 residues), see Phobius details amino acids 274 to 298 (25 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details amino acids 406 to 428 (23 residues), see Phobius details amino acids 471 to 491 (21 residues), see Phobius details PF06609: TRI12" amino acids 16 to 435 (420 residues), 39.1 bits, see alignment E=5.1e-14 TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 21 to 439 (419 residues), 264.1 bits, see alignment E=1.2e-82 PF07690: MFS_1" amino acids 25 to 417 (393 residues), 195 bits, see alignment E=2.7e-61 PF00083: Sugar_tr" amino acids 55 to 189 (135 residues), 41.8 bits, see alignment E=1e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0149)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>EX31_RS05285 MFS transporter (Rahnella sp. WP5)
MTTINSAQSEAAEQKPSIKLLFSALMLVMLLAALDQTIVSTALPTIVSELGGLDQLSWVV
TSYLLASTIVVPLYGKFGDLLGRKIVLQTAIIVFLLGSVLCGLAQNMTQLILMRALQGLG
GGGLMVVSMAAVGDVIPPSERGKYQGLFGGVFGLATVIGPLIGGFLVEHISWRWIFYINL
PLGIFALLVIGVALKSQTARIRHEIDFLGAGYLAAALTCIILFTSEGGTVYQWSDPQLWC
ILAFGLVTLGGFIYEETLAAEPIIPLGLFRDRTFLLSCAISFIIGMSLMGSMTFLPLYLQ
VVKGSSPSEAGMQLLPLMGALLFSSIVSGRLISRIGRYRIFPIIGTLLSFAGMVLLGFLK
VSTPVHMLYLYIGVLGFGLGMVMQVLVLAVQNSVSMKQMGVATSGVTLFRSIGGSIGVAM
FGAIFTHVLRDQLVALIPEGTVLPRSLSAQAVQELPAAIRADYLQAFGSALHSVYLIAAC
VMVLAFVLSLLQKDAVLKK