Protein Info for EX31_RS05200 in Rahnella sp. WP5

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details PF07291: MauE" amino acids 19 to 102 (84 residues), 30.5 bits, see alignment E=4.2e-11 PF07681: DoxX" amino acids 25 to 99 (75 residues), 54.1 bits, see alignment E=2e-18

Best Hits

KEGG orthology group: None (inferred from 97% identity to rah:Rahaq_0166)

Predicted SEED Role

"FIG027115: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (139 amino acids)

>EX31_RS05200 DoxX family protein (Rahnella sp. WP5)
MRHAPVSRLSAPVIPFAVIRWLALLALCAAYLQGGIVKLFDFPGAIAEMQHFGLSPAAPM
AVAVIVLELGASALILSGRFRWTGALALALFTFSANFMANAYWQVSGHERAMMMNGFFEH
IGLVGAFIYVAWNDLKERA