Protein Info for EX31_RS05110 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 139 to 146 (8 residues), see Phobius details amino acids 153 to 177 (25 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 222 to 248 (27 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 309 to 332 (24 residues), see Phobius details amino acids 344 to 367 (24 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 281 (256 residues), 65.9 bits, see alignment E=1.6e-22 amino acids 251 to 401 (151 residues), 54.4 bits, see alignment E=5.2e-19

Best Hits

Swiss-Prot: 65% identical to YHHS_SALEP: Uncharacterized MFS-type transporter YhhS (SEN3404) from Salmonella enteritidis PT4 (strain P125109)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0185)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>EX31_RS05110 MFS transporter (Rahnella sp. WP5)
MPDAASPDLTATSPSKTTLRILSILVFNFANYLTIGLPLAILPGYVHEHLGYSAFWAGLV
ISLQYFATLLSRPYAGRYADKVGPKKVVIFGLSGCLLSGVFYLLALGFDATPAVSLALLC
LGRVMLGAGQSFAGTGSTLWGISVVGSLHIGKVISWSGVVTYGAMAIGAPLGVLIFSFGG
LTLLSVCIILVALTALITAWRKPPVVTKAPAQIPFRQVLGKILPYGMMLALASTGFGVIA
TFITLFYAAKGWPGAAFSLTFFSVAFVGMRLLLPNSINRFGGLRVALACFVVEIAGLIMV
FFAPTAWAAMAGAFITGVGFSLVYPALGVVAVKKLPQENQGSALATYSAFLDLSLGITGP
LAGVLMAQAGIDAIYLGSALLVLMALALVVRLLLRQPPAETSASVSAD