Protein Info for EX31_RS04340 in Rahnella sp. WP5

Annotation: tyrosine-type recombinase/integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 51 to 64 (14 residues), see Phobius details PF00589: Phage_integrase" amino acids 174 to 340 (167 residues), 56.2 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: None (inferred from 98% identity to yen:YE0977)

Predicted SEED Role

"putative site specific recombinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>EX31_RS04340 tyrosine-type recombinase/integrase (Rahnella sp. WP5)
MKKYAINSFVFDNGERFCHVVDKITGEPIYYPNLYLITQVRNRSNSINTIQSIAGILAML
HSYFAINNIDIEERIFKLEFLSFNEIEVLSDYMSRNYKQGKGTPSGKLPVAKNPTNYFRF
SVICDYMQWLCKVYLTLSNDKNVELKIKNFITAVKSKRPSNVDRYKKEIPDKALNQKQLD
YLFDIVKPNSDNNPFSSEVQKRNQLIMLLLYSFGIRAGELLNLRISDIDFAHSTIAIKRR
ADDKSDPRVNQPLVKTCERKLPVGEVLMGEVYNYIIVERNKVKNAKGNDFLFITNKLGKT
VGMPLSMSAYHKIINIISKAHPELNELSGHMLRHTWNYEFSRMMDERDEPFSEEKEAQIR
SYIMGWVVDSEMAKIYNARHIVEQAHKTSLAIQNEFMERAI