Protein Info for EX31_RS04260 in Rahnella sp. WP5

Annotation: McrC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 PF10117: McrBC" amino acids 56 to 377 (322 residues), 333.5 bits, see alignment E=5.5e-104

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3860)

Predicted SEED Role

"McrBC 5-methylcytosine restriction system component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>EX31_RS04260 McrC family protein (Rahnella sp. WP5)
MLAITVREFARLTTSSIEPTLDRAQISASAFDYLCRLASSFNGGTGLLQVEDRAWLKLDN
HVGVIETPCGTRIEILPKSFMDEDCVIKARRLLRKMIEASFDLPTRHVGEASLELFNAPL
SEWVMERFVDSFSSLIKRGLRAHYQRLDEEQFYLKGQINFSAQMRQSPSQQHKFQIRHDI
FTFDRAENRLLKLALLRVSKTTQQPRTLRLSQELLSLLNEVTVSTAISRDFSAWRSDRLM
SDYQDIKPWCELVLGEHMPTSILGEWRGVSLLFPMEKLFERYVVKWLRRNLPNNAILHAP
ARSRYLCAHLESSFFRLEPDILIEHEGKTWLLDTKWKRLNSSDRASKYGLSQSDFYQLFA
YGNKYLGGQGHMFLIYPLTSTFNRPLADFSFSETLKLSAIPFDIENEELIVEHELLQLFD
KSCN