Protein Info for EX31_RS03990 in Rahnella sp. WP5

Annotation: cation-transporting P-type ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 912 transmembrane" amino acids 73 to 92 (20 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 295 to 318 (24 residues), see Phobius details amino acids 708 to 732 (25 residues), see Phobius details amino acids 739 to 759 (21 residues), see Phobius details amino acids 780 to 799 (20 residues), see Phobius details amino acids 810 to 828 (19 residues), see Phobius details amino acids 849 to 868 (20 residues), see Phobius details amino acids 880 to 903 (24 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 25 to 91 (67 residues), 68.8 bits, see alignment 7.6e-23 TIGR01494: HAD ATPase, P-type, family IC" amino acids 103 to 366 (264 residues), 137 bits, see alignment E=3.3e-44 amino acids 614 to 738 (125 residues), 122.2 bits, see alignment E=1e-39 PF00122: E1-E2_ATPase" amino acids 132 to 325 (194 residues), 180.1 bits, see alignment E=9.2e-57 PF00702: Hydrolase" amino acids 343 to 661 (319 residues), 61 bits, see alignment E=6.5e-20 PF13246: Cation_ATPase" amino acids 408 to 487 (80 residues), 46.8 bits, see alignment E=7.2e-16 PF00689: Cation_ATPase_C" amino acids 732 to 903 (172 residues), 155.4 bits, see alignment E=4.1e-49

Best Hits

KEGG orthology group: None (inferred from 68% identity to cko:CKO_03839)

Predicted SEED Role

"Putative cation-transporting P-type ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (912 amino acids)

>EX31_RS03990 cation-transporting P-type ATPase (Rahnella sp. WP5)
MTHSTSSVKTNASPSSSVATENKNWYQISGNDAMQRLGTGENGLTRHDASERLKEYGPNA
LPEKAAKSALMRFLAHFNDVLIYILLAAAIVTGAMGHWVDTLVILGVAVINALIGFLQEN
SAEKSLKSIQNMLSSQAVVMRDGQIQTINADQLVPGDIVQLRPGDKIPADLRIVSAHNLQ
VEEAILTGESTVVVKNAQVIDDEVMIGDRHNLLFSGTMISGGTATGVVYATGKDTELGHI
NQMMSSITPQRTPLLQQIDKLGKGIFALILLMMAFLFVFAFILRDMPLGELLLSLISLAV
ASVPEGLPAIISIILSLGVQSMARNHAIIRKLPTVETLGSMTVICSDKTGTLTMNEMTVK
AVILADRVYQVEGESYQPKGRIVDAQTRQQIDVTHTPVLNTFITAVDLCNDSQLMQDDKG
HWGITGGPTSGALKVLAAKSNLNTGKVEPLDKIPFDSKHKYMSTLQRINGKTRLFVTGAP
DVLFSLASFELTENGVQPFRREYWEEEMARYARQGLRMVAAALKDEPEIGGNLNHSHLQQ
GLIFVGIAGMMDPPRPEAIDAIAQCQQAGIRVKMITGDHQETAMAIGKMLGIGNSSDSIT
GYQLEHMDDAELAAAASQYDIFARTSPEHKLRLVKALQDAGEVVGMTGDGVNDAPALKQA
DVGIAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFILPTNLAQGL
LIILAILAGAVIPLTPVQILWMNMATSTTLSFGLAFEPGEKGMMRRRPRAPGQHVLDLHA
VWRIAFVGILIACSAFVLEAWMQPRGYSSDLIRTVLLQTLVTAQWVYMFNCRVMDRFPLT
REVFVNKGLWIVSGVLLLLQLALIYLPVMNQLFGTVPMPLKFWGITLVVGAMIFVIVEIE
KWLVNRFIRKKV