Protein Info for EX31_RS03735 in Rahnella sp. WP5

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 36 to 159 (124 residues), 66.6 bits, see alignment E=1.5e-22

Best Hits

Swiss-Prot: 56% identical to YABI_ECOLI: Inner membrane protein YabI (yabI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3757)

Predicted SEED Role

"DedA family inner membrane protein YabI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>EX31_RS03735 DedA family protein (Rahnella sp. WP5)
MEAYLQHLVAQSVGLALIIVAVVAFFESLALVGLILPGTVMMATLGTLIGSGQVGLYEAW
LAAGLGCFFGDWASYFIGRGFKEPLHRWRFLKRYQSLLDKTGYALDRHSFATVIIGRFIG
PTRPLVPMVAGMLNLPPYKFAPPNIIGCITWPPVYFLPGILAGVAIDIPASHNSSVFKWM
LFAAVVLIWLSAWLLWRWFRSGKASPDAMTKWLPLARLRIVCVLSLVATAVSLVMLSEQP
MMPVYGHLLWQVITR