Protein Info for EX31_RS03530 in Rahnella sp. WP5

Annotation: protein transport protein HofC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 173 to 193 (21 residues), see Phobius details amino acids 213 to 240 (28 residues), see Phobius details amino acids 287 to 304 (18 residues), see Phobius details amino acids 378 to 399 (22 residues), see Phobius details PF00482: T2SSF" amino acids 71 to 194 (124 residues), 111.2 bits, see alignment E=1.7e-36 amino acids 276 to 397 (122 residues), 89.2 bits, see alignment E=1.1e-29

Best Hits

KEGG orthology group: K02505, protein transport protein HofC (inferred from 99% identity to rah:Rahaq_3715)

Predicted SEED Role

"Type IV fimbrial assembly protein PilC" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>EX31_RS03530 protein transport protein HofC (Rahnella sp. WP5)
MKTDSGAPQSWRLYHWQAIDTLGSLQQDHCIEVGKDGIYQQLFAAGLQPLKIRMKQRLGR
RFWKNQERVAFVRQLATLLQAGLPLVNSLTLLANEHPKPAWHCVLSNVAKGVREGKPLSV
TLNHYPDVFPDIYRQIISIGEITGQLDKCCLQLATQQEQQAELRSKVKKALRYPLIVSVI
AIVVTLLMLTLVLPEFAKIYASFDAELPWFTRMLVIASGALISTGPWLVGIFSLCCFGYL
QKLHPLKHWQLREQMLLLRLPLTSRLVTDSCLSQIFQTLAMTQQAGMTLIAGLAAASASM
SNLHFQAALNQIREQIMQGTPLHKAFVQSPLFPTLCHQLIKIGEESGSLDELLLKLAYLH
HDKANSLAETLSQTIEPVLMAVMGVIVGGLVIAMYLPIFQLGSVMG