Protein Info for EX31_RS03410 in Rahnella sp. WP5

Annotation: type 1 fimbrial protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 PF00419: Fimbrial" amino acids 139 to 285 (147 residues), 72.5 bits, see alignment E=2.4e-24

Best Hits

Predicted SEED Role

"Fimbrial protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (286 amino acids)

>EX31_RS03410 type 1 fimbrial protein (Rahnella sp. WP5)
MPVGADIPGSQHTFSISGTCGTNGSNELSGDPIIACYYGNGTEIAGFPGVYSTGVEGIGI
ALTNSSGQRVVGGGVSCDTRNTSLGNLDSSLSYQIAVTLSLVKTANDISDTALAQSQTRF
GLGVYGKSGLGGGGANTLSYTGNINIRTESCDVLNNTINVSLGTVWPGLFSSASAGGVTP
DVPFSIELNCDAGANVNIRIDGTADDSLAAGVIKISNGAEGQASGVGIQILKGDTSPVSL
GQQWAITPSASEGSLSIPFFARYYLNGQTLSSGSANGTATFTMIYY