Protein Info for EX31_RS03065 in Rahnella sp. WP5

Annotation: chitinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00182: Glyco_hydro_19" amino acids 106 to 334 (229 residues), 128.5 bits, see alignment E=5.6e-41 PF05345: He_PIG" amino acids 448 to 526 (79 residues), 22.9 bits, see alignment E=1.5e-08 PF02839: CBM_5_12" amino acids 544 to 582 (39 residues), 27 bits, see alignment 5.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3625)

Predicted SEED Role

"Chitinase (EC 3.2.1.14)" in subsystem Chitin and N-acetylglucosamine utilization (EC 3.2.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.14

Use Curated BLAST to search for 3.2.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (594 amino acids)

>EX31_RS03065 chitinase (Rahnella sp. WP5)
MRRTKDKYLLNLITLSCLMACVAPAMAADTSDPYVIKESDLIKKENSLTQNPLMQEVKAS
IRTLDNASVDKIAPGRSDNPANVKRVDSILGGDKWEHIFPLRDPSYTYTKFLQAIGKFPA
VCGTYTDGRDSDAICRKGLATMFAHFAQETGGHESWRPEAEWRQGLVYLREMGWKEGQKG
GYNGECNPNVWQGQTWPCGKDADGDFVSYFGRGAKQLSYNYNYGPFSDAMFGTVRTLLDK
PELVADTWLNLASAVFFYVTPQAPKPSMLHVIDGTWQPNDRDKANGLVPGFGVTIQIING
GVECGGSQEIAQGLNRISYYKSEAEYLKVPVPANEVLGCKNMKQFDEGGAGALPQYWEQD
WGWSSETPTGLTYSCQLVGYQTPFSAFKEGDYKRCVQHFFNVKVVDDAGKEEAVTPAPEP
TPAPTPEPTPAPADGNSTPVAKLSGPIGDVESQANVTLNAAESTDADGDKLTYSWLLPNG
STLAGNDRESLSFVAPVVTTKQSFNFTLTVSDGKKSSVATYVLTVTPKVLPIPDEGTSTG
CADNWDAGKVYNGGESVNWKGKEYLANYWTQNNEPGNPSFTGEWSQWKEIKACK