Protein Info for EX31_RS02985 in Rahnella sp. WP5

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 336 to 354 (19 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 388 to 413 (26 residues), see Phobius details amino acids 433 to 452 (20 residues), see Phobius details amino acids 464 to 490 (27 residues), see Phobius details amino acids 521 to 545 (25 residues), see Phobius details amino acids 863 to 882 (20 residues), see Phobius details amino acids 889 to 908 (20 residues), see Phobius details amino acids 914 to 936 (23 residues), see Phobius details amino acids 962 to 982 (21 residues), see Phobius details amino acids 988 to 1011 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1013 (1009 residues), 555.3 bits, see alignment E=1.3e-170

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3609)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1021 amino acids)

>EX31_RS02985 efflux RND transporter permease subunit (Rahnella sp. WP5)
MGINESFINNPTRIWLVILLLGVGGLIALFNIGRLEDPAFTIKTAVVAVQYPGASSQQVE
EEVTLPLENALQRLPYVDNISSISAVGLSQITVNIDSRYHSSELPQIWDELRRRVNDATL
QFPPGVSPPFVNDDFGDVYGYFFSIYGDNFSNPELRKYAEQLRRELVLVPGVGKVAIGGV
LPEQVNIEISRAKMAAYGVTLPRLADVLNRQNMVSDAGSMTVGSESIRLHPTGGFENIDE
LNNVLISPAGSTHSIYLRDIATISQGITDHPGNIYHANGRNALTIGVSYIPGVNVMNIGR
AIEARMHQLEADKPAGIQLKVFYDQAAEVKKSVDGFIINFLMALAIVVGVLLIFMGLRSG
IIIAVSLALNVLGTLLIMYLSGIELQRISLGALIIALSMLVDNAIVVVEGVLISRQQGNP
LMNAISQIIKRSALPLLGATVIAILAFAPIGLSQDSTGEYCKSLFQVLLISLMLSWVTAL
TLTPVLVKWAFANMKVADKKPDEQIDPYGGRIFRVYRRMLSALLAHQALTLSVLAALLVA
SVWGFGSVRQNFFPSSNTPIFFVDLWLPYGTDINYTARIAGEIEKDINKQEGVENTVTTV
GQGGMRFILTYNGQRQYSNYAQIMVRMDDQRKIAALAHSTEQNIRNHYPEVNASLKRIMF
GPSGDSAIEVRIKGSDPDQLRNIASQVDKIILDDGAADGVRNDWQDRSKMVRPVFSPYLG
RELGVDKGETDSALQMNFSGSTVGIFRDGSTLMPIVLRPPSSERLDVDHMANIMVWSQTR
QQFIPLSNVVSDFKVEWEDPLIMRRDRSRVLTVQTDPDPASGETSGDMLARIKPQVEALK
LPHGYSIEWGGDAENSAEAQQGLFTTLPVGFLMMFIITVLMFSSVKNAIAIWLTVPLALI
GVTFGFLLTGIPFGFMALIGLLSLSGMLIRNGIVLVEEIGQQKKEKNQTDAIIYAATSRL
RPILLTAFTTVLGLAPLLLDVFFQSMAVVIMFGLGFATVLTLLALPVIYNCFHREGQRRT
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