Protein Info for EX31_RS02980 in Rahnella sp. WP5

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 32 to 355 (324 residues), 244 bits, see alignment E=9.6e-77 PF13533: Biotin_lipoyl_2" amino acids 59 to 98 (40 residues), 26.5 bits, see alignment 8.6e-10 PF16576: HlyD_D23" amino acids 59 to 251 (193 residues), 45 bits, see alignment E=1.6e-15 PF13437: HlyD_3" amino acids 154 to 248 (95 residues), 40.5 bits, see alignment E=7.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3608)

Predicted SEED Role

"Probable Co/Zn/Cd efflux system membrane fusion protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>EX31_RS02980 efflux RND transporter periplasmic adaptor subunit (Rahnella sp. WP5)
MDIRFSPALLILFLISACDQKATDPPSPPRQVKIATAEAASPLSTRVFPARILAGDNTDI
AFKRAGQLQTLDVREGEAVKQGQILARLTNNDARQRLNDRQSAATLAQRQFERYQTLARR
NVVSQAELEVHKASRDSAAAALKIAQEELNDLNLTAPFSGVIARLSVRNHQVVAAGQPVA
TISRSDVLDVVFSVPENLFTSLDVRNVDYRPRVRINNLPDREFTATYKEHTASSEANTLT
WQVTLVMPRPENFPAVAGLSGTVTVNPANLATATPVSTLVIPVEAVFNPDSSQRNDAHVW
VVAGEGDTLHVEDRKVTVGELTSQGIEITAGLQKGDRVVAAGVGELHAQQPVRIWTRERG
L