Protein Info for EX31_RS02975 in Rahnella sp. WP5

Annotation: cation-transporting P-type ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 903 transmembrane" amino acids 71 to 88 (18 residues), see Phobius details amino acids 94 to 110 (17 residues), see Phobius details amino acids 256 to 275 (20 residues), see Phobius details amino acids 287 to 312 (26 residues), see Phobius details amino acids 700 to 721 (22 residues), see Phobius details amino acids 731 to 751 (21 residues), see Phobius details amino acids 772 to 790 (19 residues), see Phobius details amino acids 802 to 820 (19 residues), see Phobius details amino acids 841 to 860 (20 residues), see Phobius details amino acids 872 to 891 (20 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 17 to 83 (67 residues), 65.8 bits, see alignment 5.6e-22 TIGR01494: HAD ATPase, P-type, family IC" amino acids 95 to 358 (264 residues), 132 bits, see alignment E=1.1e-42 amino acids 607 to 729 (123 residues), 120.1 bits, see alignment E=4.5e-39 PF00122: E1-E2_ATPase" amino acids 124 to 316 (193 residues), 170.4 bits, see alignment E=7.6e-54 PF13246: Cation_ATPase" amino acids 400 to 481 (82 residues), 39.5 bits, see alignment E=1.2e-13 PF00702: Hydrolase" amino acids 537 to 653 (117 residues), 53.3 bits, see alignment E=1.2e-17 PF00689: Cation_ATPase_C" amino acids 724 to 895 (172 residues), 157.6 bits, see alignment E=7.1e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3607)

Predicted SEED Role

"Ca ion P-type ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (903 amino acids)

>EX31_RS02975 cation-transporting P-type ATPase (Rahnella sp. WP5)
MNNPAPYSVNKTTETLWYQQSVEESLTGLQSGPDGLSPEDAKNKLHHYGPNVLPQKEGKS
LFIKFISHFKDILIYILLAAAVVTAIMGHWVDTLVILGVAVINALIGFIQENNAEKSLKS
IQNMLSSEALVLRGGQQVTVGTDEIVPGDIVLLRPGDKIPADLRLIDVHNLRVEEAILTG
ESTVVSKKTGALEGEKSIGDRKNLAFSGTTVSSGTASGVVFATGGQTELGHINEMLSSIE
DNKTPLLVQIDKLGKSIFVIILFMMVALLIFGYLLRDIPFAELLLSVISLAVAAVPEGLP
AIISIILSLGVQAMARSKAIIRKLPTVETLGAMSVICSDKTGTLTMNEMTVKAVILADNV
WTVEGNSYEPMGSFSIAGSASPLPADSSPLLTQFLRTVDICNDSTLSQDAQGHWGITGGP
TEGALKVLAAKAHLPELPFNLSSKIPFDSLYKYMAVAGETNGQSQIMLTGAPDVLLKLCQ
FQQTPEGAVPLDHAYWESAITQYASEGLRMVAAAWKPVDQPVASLDHPELSHGMVLIGIA
GMMDPPRPEAIVAIGECQQAGIRVKMITGDHQETAMAIGKMLGIGNSENSITGYELEHMD
DAQLRTAAKQFDIFARTSPEHKLRLVKALQDTGEIVGMTGDGVNDAPALKQANVGIAMGI
KGTEVTKESADMILVDDNFATIANAVREGRRVYDNLKKTILFIMPTNLAQGLLIIIAILM
GNLLPLTPVQILWMNMATSATLSFGLAFEKAESRVMRRPPRNVSAHVMDKYAIWRVAFVG
LLISISAFMLEAWLQPRGYEPEFIRTVLLQTLVTAQWVYMINCRDSDNFSLSRGLLHNKG
IWIVTLVLFALQAIIIYVPLMNTLFGTRPLPFIYWIIGLIIGVALFVIVEIEKVLTRRWR
KAS