Protein Info for EX31_RS02955 in Rahnella sp. WP5

Annotation: YjbF family lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF11102: YjbF" amino acids 24 to 208 (185 residues), 164.2 bits, see alignment E=1.5e-52

Best Hits

Swiss-Prot: 44% identical to GFCB_ECOLI: Uncharacterized lipoprotein GfcB (gfcB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to rah:Rahaq_3602)

Predicted SEED Role

"Uncharacterized lipoprotein YmcC precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>EX31_RS02955 YjbF family lipoprotein (Rahnella sp. WP5)
MRYSLLFLCLLLQACSPSQNSLVDTFKVAVKGPQDVVVPPQRIAAIPYGSIYLKLPTSAQ
IFVVGYLQDGFEKWSTGDQVVFITQNGRLVRSTGYSQGDLLEVTNLQQDPLLHAASLREG
ASWTRLMRWTENRQPLSSVVTSRFSRQDDETLTLPGRVVACQVWREDVTLEATGDRWQNT
FWVDPHSGLVLKSNQRLGADMPVSMTLLKPANAGIPPA