Protein Info for EX31_RS02890 in Rahnella sp. WP5

Annotation: lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 327 to 346 (20 residues), see Phobius details amino acids 364 to 389 (26 residues), see Phobius details amino acids 394 to 412 (19 residues), see Phobius details amino acids 419 to 440 (22 residues), see Phobius details amino acids 446 to 468 (23 residues), see Phobius details PF01943: Polysacc_synt" amino acids 13 to 278 (266 residues), 100.1 bits, see alignment E=2.4e-32 PF13440: Polysacc_synt_3" amino acids 36 to 328 (293 residues), 212.6 bits, see alignment E=1.2e-66 PF14667: Polysacc_synt_C" amino acids 329 to 467 (139 residues), 42.6 bits, see alignment E=1e-14

Best Hits

KEGG orthology group: None (inferred from 50% identity to psn:Pedsa_1027)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>EX31_RS02890 lipopolysaccharide biosynthesis protein (Rahnella sp. WP5)
MKSQENARRPSILSGAIWSILDNTASQVITFVIFIVLAKILTPSIYGMLSVSLLVTQFFK
SVLFDSIATSIVRKKSPSEVDYNSALFLCFSLSVPAFLIVFFAAPFIEAYMNVPQLANVI
RGTGVIILVSGLSRTHEAWLSHNMMFRPLAIRSMTSISIGGIVGVVMAYNGFAVASLVVQ
QVVTSLISLVALWVATPWKPRMKISRESMKESLGFSKHVALSNVTNFANQNSDVFFITYF
LGSAAAGIYSAGKRIVNTLNLVLASALMRVSLPAFSRYKNDINEFGKKYLQATYLTVLVT
APAFVGLATLSHDITFLLLGHKWMNSVPVMQIVSAVGFVTSIGYYNHSVMFARDKPEWQA
RLTLVYAITNVVAFYFFVRFGLIATALVFSIRTVLLYPISAWCALTLLNLTFKQYVKELI
TPVICSVLMCMILVAVQQYAVLSESWFGLMIKIGIGAVCYFALIFTFSSVSKRTMIFSLA
RKILQRG