Protein Info for EX31_RS02820 in Rahnella sp. WP5

Annotation: YhcH/YjgK/YiaL family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details PF04074: DUF386" amino acids 53 to 204 (152 residues), 135.2 bits, see alignment E=9.3e-44 TIGR00022: YhcH/YjgK/YiaL family protein" amino acids 67 to 207 (141 residues), 130.8 bits, see alignment E=1.7e-42

Best Hits

KEGG orthology group: None (inferred from 98% identity to rah:Rahaq_3572)

Predicted SEED Role

"putative cytoplasmic protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>EX31_RS02820 YhcH/YjgK/YiaL family protein (Rahnella sp. WP5)
MSDADELPSYPLINGLVGYSMYMMMLPGRQFQIYNLFSRNPTLNINIKGLFNMIVCCLRD
WEREKFAFHPIINKGIEYITQTDFTTLTPGKFDIIPDKMFCLLQEMNTVPAHEMRAESHF
RFADIQFLLQGEETIGVARGAAEHKVAEDRAEKHDIVFYQETNNESLIRLEPGMFAVFFP
QDLHRPCCNTRSQSFIRKAVIKIHLSLFNDDLFMNNQ