Protein Info for EX31_RS02545 in Rahnella sp. WP5

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 49 to 73 (25 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details PF12146: Hydrolase_4" amino acids 120 to 229 (110 residues), 43 bits, see alignment E=8.7e-15 PF12697: Abhydrolase_6" amino acids 122 to 221 (100 residues), 48.1 bits, see alignment E=6.2e-16 PF00561: Abhydrolase_1" amino acids 122 to 223 (102 residues), 51.5 bits, see alignment E=2.9e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4705)

Predicted SEED Role

"conserved hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>EX31_RS02545 alpha/beta hydrolase (Rahnella sp. WP5)
MFYSFFYPVLLFLSLVHQNYLRVLVIMRLRPTLLMKAKIRPATHYTRACKLISLFDLYSL
HAMSSYLSALYALRLFEKTRPLPYKQGEIMLLSRCVQEELYWRKSFVKVFIYPQADPQAE
KVLLLHGWDGRSIMLRQMAQRLQEKGYTVFAPDLPAHGISPGKKVSFYDLSRAVMEMEKH
YGHFSVIIGHSTGGLIGCMAALQGLLFKRMILIGSPCSYGKMMDRYVRNNKLPRRIAVSM
KKLYQRRYGVHPDVIGPELIGSITQPVMILHDKNDLSIELDEAEILSHSLKKSELIVTEG
KGHNGALRDPVVFNYISNFLRDTLHEDFSSFHEPKLILRVENNKKWHKKSY