Protein Info for EX31_RS02515 in Rahnella sp. WP5

Annotation: PAS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 120 to 136 (17 residues), see Phobius details PF13188: PAS_8" amino acids 122 to 173 (52 residues), 29 bits, see alignment 1.5e-10 PF00989: PAS" amino acids 122 to 164 (43 residues), 28.2 bits, see alignment 3.2e-10 PF00512: HisKA" amino acids 228 to 295 (68 residues), 29.1 bits, see alignment E=1.6e-10 PF02518: HATPase_c" amino acids 334 to 437 (104 residues), 61.6 bits, see alignment E=1.9e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4699)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>EX31_RS02515 PAS domain-containing protein (Rahnella sp. WP5)
MSKLFRSFESRHLILCSLSPLGGVVAYLLLWFFPQQSLYLKFLTLFILCVTLVYFSYHFF
QQLLYKINVISNLLEAVEQEDFSLRGVTSGEGVFEGVIEQINAISGQLSRHRQQQREMDF
LLQKVISNITVAIFAIDGNNRLMWCNDAASRMLGTSLEKLIGEKCSHWQLDTLLQNANRE
HPVESSHAGRPGRYKVSSDTYMVDGIQNVLLFVSDVDDMLRKEEQKAWQNLLRVISHEIN
NSLSPIASISQMLQQHYRRHTENLPEGFAEGIDLINRRAKELIAFISSYRQLSKLAPPVK
APLDFAALIAELPLLFAHRKITLKGPAPLRVNVDRVQIHQLLINLIKNADEATSDTTAPV
CIEWSEEKGCLFVTILDQGVGLTNPKNLFVPFYTTKPNGSGIGLILCRQIAESHGGYLSL
ENRHDRTGCRVTLNLPL