Protein Info for EX31_RS02405 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details amino acids 216 to 239 (24 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details amino acids 308 to 308 (1 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 370 to 390 (21 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 336 (312 residues), 113 bits, see alignment E=1.5e-36 amino acids 223 to 395 (173 residues), 46.5 bits, see alignment E=2.5e-16 PF00083: Sugar_tr" amino acids 58 to 193 (136 residues), 28.3 bits, see alignment E=8.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4677)

Predicted SEED Role

"major facilitator superfamily MFS_1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>EX31_RS02405 MFS transporter (Rahnella sp. WP5)
MTECSSLDTRPETSAFRRWLAVFSLACGTFALVNTEFLPIGLLSPIAQSLGVTEGHAGLA
VMLPGLVAAISAPLIMLFARKMDRRTLLLLLSATVIVANGIAVMAQSFNILLIGRIILGI
GVGGFWSFAVPSGRRLVSEEQGARAISLITAGVAVGTVAGVPAGAFIGDLFGWRMAFMLN
AVLALAFFVLQWLALPSLPAQHSIGLRAMLSVTKVAGIRYALIIGVFMAGGHFAAYTYLE
PWLRFSLHLSASNISLLLMGYGVAGLLGTLTTEITVRELGVKKAFMLNMLLLSASVLVLS
LFPVPLALACALVILWGLAFGALPVCLNIWTYQASPALFETGSALLVCVFQTSLALGALF
GGILADSAGVSSAFLLGGVLTLLAGITIFLSRPQPAVLHAAGK