Protein Info for EX31_RS02190 in Rahnella sp. WP5

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 81 to 99 (19 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 232 to 256 (25 residues), see Phobius details amino acids 263 to 283 (21 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 319 to 341 (23 residues), see Phobius details amino acids 361 to 384 (24 residues), see Phobius details amino acids 399 to 422 (24 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 10 to 438 (429 residues), 399.5 bits, see alignment E=8e-124 PF13347: MFS_2" amino acids 12 to 430 (419 residues), 292.8 bits, see alignment E=1.8e-91

Best Hits

Swiss-Prot: 50% identical to YICJ_ECOLI: Inner membrane symporter YicJ (yicJ) from Escherichia coli (strain K12)

KEGG orthology group: K03292, glycoside/pentoside/hexuronide:cation symporter, GPH family (inferred from 100% identity to rah:Rahaq_4632)

Predicted SEED Role

"Xyloside transporter XynT" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>EX31_RS02190 transporter (Rahnella sp. WP5)
MTAKLSVKEKVSYGLGDMASHIGLDNVIIFLTFYYTDVVGLPAVFVGTMFLVARVADAIV
DPAMGLIADRTQTRFGKFRPYILWLALPFGASCLLVYAVPESLTLGGKMVYASVTYCVMM
LMYTAINIPYCSMGAIITPDNTQRISLQSYRFFLATLGGAMSTFLMMPLAEMMGGGNKLD
GYFGAMAIMASIAVVMFLLCFLNTKERISAPPTHENFLSDLRDLVRNDQWRVVAALIFFN
ISFGVVRLGAMMYYVTYYLGNASYFMWLLAAHIVGKSLGSLLVKPLTRNRSKLAAFTLCA
ILTGALSAAIFFVPAWISLLVGMTLLVSTFYQVTTTLMWVMMSDVVDYGEYKQGKRMDGT
VFSTLLAILKMGMAVSGAVVGWTLGMSGYVPHAAQQNTVAMLSIIALFSLVPGVLSMFSA
LSMRWYKLNDATMKQINQSKISREHEPEPQATLHTQESA