Protein Info for EX31_RS02185 in Rahnella sp. WP5

Annotation: glycoside hydrolase family 31 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 PF13802: Gal_mutarotas_2" amino acids 20 to 194 (175 residues), 42.4 bits, see alignment E=1.5e-14 PF01055: Glyco_hydro_31_2nd" amino acids 240 to 576 (337 residues), 263.6 bits, see alignment E=4.6e-82 PF21365: Glyco_hydro_31_3rd" amino acids 587 to 671 (85 residues), 85.1 bits, see alignment E=5.5e-28

Best Hits

KEGG orthology group: K01811, putative family 31 glucosidase (inferred from 99% identity to rah:Rahaq_4631)

Predicted SEED Role

"Alpha-xylosidase (EC 3.2.1.-)" in subsystem Xylose utilization (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (679 amino acids)

>EX31_RS02185 glycoside hydrolase family 31 protein (Rahnella sp. WP5)
MSELIAEKNRILWHFDQQTLVIEPWGENSLRVRATCRPELNDSLWALLPADTQPQADISH
STETLTLRNGNITATVNIKGQLAFYNLRGELILEEYWRQRSTVGIGATEKSQDKYISALK
MDAREFKAIPGGKHQLTVRFESRPDEKIYGMGQYQQSCLDLKGCTLELAQRNSQASVPFM
LSSLGYGMLWNNPAIGEATFGKNITRWEAQVTEQMDYWITAGDTPADILHQYGRATGTAP
QMPEYATGFWQCKLRYRTQQEVLEVAREYKRRNLPVSVIVIDFFHWPNQGTWCFDPVDWP
DPKAMVAELKSLGIETMVSVWPTVDSRTDNYKEMKSKGYLVNTDRGVSVNLDFLGNCTFF
DATHPGARQFVWDKVKQNYYDLGIRTFWLDEAEPEYRAYDFDNYRYHLGPVLEVGNIYPQ
KFAQGFYDGLQQEGEHEIVNLVRCAWAGSQRYGVLAWSGDIHSSFHALRNQIAAGLNMGL
AGIPWWTTDIGGFQGGNVNDPAFQELLIRWFQWGVFCPVMRLHGYREPQIQPSEPWRDGI
AQCNSGAPNEVWSYGEENYPLMKSGLFLREKLRPYISRVMQEAHENGDPAMRTLFYQYPG
QAESWQVEDQYMLGADILVAPVLYAGQREREVWLPAGETWVALNGERYEGGRAITVAAPM
SEIPVFVREGADPAARAIL