Protein Info for EX31_RS02120 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 96 to 121 (26 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 248 to 269 (22 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details amino acids 367 to 387 (21 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 287 (279 residues), 79.8 bits, see alignment E=1.9e-26 PF12832: MFS_1_like" amino acids 21 to 372 (352 residues), 47.6 bits, see alignment E=1.3e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4618)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>EX31_RS02120 MFS transporter (Rahnella sp. WP5)
MSIRSLQALCLTSFFIADVRDGLGPFLGIFLTQRHWQPDDIGLLMTAGGVAGLLATLPAG
FMTDASKNKRLILALLCVLITGTTLLLWLSQANAVVAFSQIVSGICAAFVGPLITGITLG
LTGQKGFSAQMGKNEAFNHAGNFITALIAGGIAWYWGIGGIFILMTCTMLLTLIALTGIR
RSDIDDDAARGLESGASAQVPDFSVLAQNKPLLITGLTLLLFHLANAALLPMLSMRIAAA
PGSVNPGLYAAATVIISQMVMIPVAIWTAARIDRVGYWRLIMLALLIMPVRAALAASSAA
PLMMVPVQILDGFAAGVLGVVVPSFIVVLLRGNGHVNAGQSVVMLMQGVGAAMSPALTGM
IAGHYSFATAFSVLSVIALTGLLIWWRYAPLLSTQSCMETS